865 lines
36 KiB
Go
865 lines
36 KiB
Go
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// Code generated by protoc-gen-go. DO NOT EDIT.
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// source: google/genomics/v1/references.proto
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package genomics
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import proto "github.com/golang/protobuf/proto"
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import fmt "fmt"
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import math "math"
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import _ "google.golang.org/genproto/googleapis/api/annotations"
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import (
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context "golang.org/x/net/context"
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grpc "google.golang.org/grpc"
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)
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// Reference imports to suppress errors if they are not otherwise used.
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var _ = proto.Marshal
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var _ = fmt.Errorf
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var _ = math.Inf
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// A reference is a canonical assembled DNA sequence, intended to act as a
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// reference coordinate space for other genomic annotations. A single reference
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// might represent the human chromosome 1 or mitochandrial DNA, for instance. A
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// reference belongs to one or more reference sets.
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//
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// For more genomics resource definitions, see [Fundamentals of Google
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// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
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type Reference struct {
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// The server-generated reference ID, unique across all references.
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Id string `protobuf:"bytes,1,opt,name=id" json:"id,omitempty"`
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// The length of this reference's sequence.
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Length int64 `protobuf:"varint,2,opt,name=length" json:"length,omitempty"`
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// MD5 of the upper-case sequence excluding all whitespace characters (this
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// is equivalent to SQ:M5 in SAM). This value is represented in lower case
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// hexadecimal format.
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Md5Checksum string `protobuf:"bytes,3,opt,name=md5checksum" json:"md5checksum,omitempty"`
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// The name of this reference, for example `22`.
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Name string `protobuf:"bytes,4,opt,name=name" json:"name,omitempty"`
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// The URI from which the sequence was obtained. Typically specifies a FASTA
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// format file.
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SourceUri string `protobuf:"bytes,5,opt,name=source_uri,json=sourceUri" json:"source_uri,omitempty"`
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// All known corresponding accession IDs in INSDC (GenBank/ENA/DDBJ) ideally
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// with a version number, for example `GCF_000001405.26`.
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SourceAccessions []string `protobuf:"bytes,6,rep,name=source_accessions,json=sourceAccessions" json:"source_accessions,omitempty"`
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// ID from http://www.ncbi.nlm.nih.gov/taxonomy. For example, 9606 for human.
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NcbiTaxonId int32 `protobuf:"varint,7,opt,name=ncbi_taxon_id,json=ncbiTaxonId" json:"ncbi_taxon_id,omitempty"`
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}
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func (m *Reference) Reset() { *m = Reference{} }
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func (m *Reference) String() string { return proto.CompactTextString(m) }
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func (*Reference) ProtoMessage() {}
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func (*Reference) Descriptor() ([]byte, []int) { return fileDescriptor10, []int{0} }
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func (m *Reference) GetId() string {
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if m != nil {
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return m.Id
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}
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return ""
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}
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func (m *Reference) GetLength() int64 {
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if m != nil {
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return m.Length
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}
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return 0
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}
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func (m *Reference) GetMd5Checksum() string {
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if m != nil {
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return m.Md5Checksum
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}
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return ""
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}
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func (m *Reference) GetName() string {
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if m != nil {
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return m.Name
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}
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return ""
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}
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func (m *Reference) GetSourceUri() string {
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if m != nil {
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return m.SourceUri
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}
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return ""
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}
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func (m *Reference) GetSourceAccessions() []string {
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if m != nil {
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return m.SourceAccessions
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}
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return nil
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}
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func (m *Reference) GetNcbiTaxonId() int32 {
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if m != nil {
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return m.NcbiTaxonId
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}
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return 0
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}
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// A reference set is a set of references which typically comprise a reference
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// assembly for a species, such as `GRCh38` which is representative
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// of the human genome. A reference set defines a common coordinate space for
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// comparing reference-aligned experimental data. A reference set contains 1 or
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// more references.
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//
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// For more genomics resource definitions, see [Fundamentals of Google
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// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
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type ReferenceSet struct {
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// The server-generated reference set ID, unique across all reference sets.
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Id string `protobuf:"bytes,1,opt,name=id" json:"id,omitempty"`
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// The IDs of the reference objects that are part of this set.
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// `Reference.md5checksum` must be unique within this set.
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ReferenceIds []string `protobuf:"bytes,2,rep,name=reference_ids,json=referenceIds" json:"reference_ids,omitempty"`
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// Order-independent MD5 checksum which identifies this reference set. The
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// checksum is computed by sorting all lower case hexidecimal string
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// `reference.md5checksum` (for all reference in this set) in
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// ascending lexicographic order, concatenating, and taking the MD5 of that
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// value. The resulting value is represented in lower case hexadecimal format.
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Md5Checksum string `protobuf:"bytes,3,opt,name=md5checksum" json:"md5checksum,omitempty"`
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// ID from http://www.ncbi.nlm.nih.gov/taxonomy (for example, 9606 for human)
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// indicating the species which this reference set is intended to model. Note
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// that contained references may specify a different `ncbiTaxonId`, as
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// assemblies may contain reference sequences which do not belong to the
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// modeled species, for example EBV in a human reference genome.
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NcbiTaxonId int32 `protobuf:"varint,4,opt,name=ncbi_taxon_id,json=ncbiTaxonId" json:"ncbi_taxon_id,omitempty"`
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// Free text description of this reference set.
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Description string `protobuf:"bytes,5,opt,name=description" json:"description,omitempty"`
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// Public id of this reference set, such as `GRCh37`.
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AssemblyId string `protobuf:"bytes,6,opt,name=assembly_id,json=assemblyId" json:"assembly_id,omitempty"`
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// The URI from which the references were obtained.
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SourceUri string `protobuf:"bytes,7,opt,name=source_uri,json=sourceUri" json:"source_uri,omitempty"`
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// All known corresponding accession IDs in INSDC (GenBank/ENA/DDBJ) ideally
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// with a version number, for example `NC_000001.11`.
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SourceAccessions []string `protobuf:"bytes,8,rep,name=source_accessions,json=sourceAccessions" json:"source_accessions,omitempty"`
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}
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func (m *ReferenceSet) Reset() { *m = ReferenceSet{} }
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func (m *ReferenceSet) String() string { return proto.CompactTextString(m) }
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func (*ReferenceSet) ProtoMessage() {}
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func (*ReferenceSet) Descriptor() ([]byte, []int) { return fileDescriptor10, []int{1} }
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func (m *ReferenceSet) GetId() string {
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if m != nil {
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return m.Id
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}
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return ""
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}
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func (m *ReferenceSet) GetReferenceIds() []string {
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if m != nil {
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return m.ReferenceIds
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}
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return nil
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}
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func (m *ReferenceSet) GetMd5Checksum() string {
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if m != nil {
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return m.Md5Checksum
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}
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return ""
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}
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func (m *ReferenceSet) GetNcbiTaxonId() int32 {
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if m != nil {
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return m.NcbiTaxonId
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}
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return 0
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}
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func (m *ReferenceSet) GetDescription() string {
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if m != nil {
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return m.Description
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}
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return ""
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}
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func (m *ReferenceSet) GetAssemblyId() string {
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if m != nil {
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return m.AssemblyId
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}
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return ""
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}
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func (m *ReferenceSet) GetSourceUri() string {
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if m != nil {
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return m.SourceUri
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}
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return ""
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}
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func (m *ReferenceSet) GetSourceAccessions() []string {
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if m != nil {
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return m.SourceAccessions
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}
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return nil
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}
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type SearchReferenceSetsRequest struct {
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// If present, return reference sets for which the
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// [md5checksum][google.genomics.v1.ReferenceSet.md5checksum] matches exactly.
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Md5Checksums []string `protobuf:"bytes,1,rep,name=md5checksums" json:"md5checksums,omitempty"`
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// If present, return reference sets for which a prefix of any of
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// [sourceAccessions][google.genomics.v1.ReferenceSet.source_accessions]
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// match any of these strings. Accession numbers typically have a main number
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// and a version, for example `NC_000001.11`.
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Accessions []string `protobuf:"bytes,2,rep,name=accessions" json:"accessions,omitempty"`
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// If present, return reference sets for which a substring of their
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// `assemblyId` matches this string (case insensitive).
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AssemblyId string `protobuf:"bytes,3,opt,name=assembly_id,json=assemblyId" json:"assembly_id,omitempty"`
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// The continuation token, which is used to page through large result sets.
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// To get the next page of results, set this parameter to the value of
|
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// `nextPageToken` from the previous response.
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PageToken string `protobuf:"bytes,4,opt,name=page_token,json=pageToken" json:"page_token,omitempty"`
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// The maximum number of results to return in a single page. If unspecified,
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// defaults to 1024. The maximum value is 4096.
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PageSize int32 `protobuf:"varint,5,opt,name=page_size,json=pageSize" json:"page_size,omitempty"`
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}
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func (m *SearchReferenceSetsRequest) Reset() { *m = SearchReferenceSetsRequest{} }
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func (m *SearchReferenceSetsRequest) String() string { return proto.CompactTextString(m) }
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func (*SearchReferenceSetsRequest) ProtoMessage() {}
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func (*SearchReferenceSetsRequest) Descriptor() ([]byte, []int) { return fileDescriptor10, []int{2} }
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func (m *SearchReferenceSetsRequest) GetMd5Checksums() []string {
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if m != nil {
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return m.Md5Checksums
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}
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return nil
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}
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func (m *SearchReferenceSetsRequest) GetAccessions() []string {
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if m != nil {
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return m.Accessions
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}
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return nil
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}
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func (m *SearchReferenceSetsRequest) GetAssemblyId() string {
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if m != nil {
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return m.AssemblyId
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}
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return ""
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}
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func (m *SearchReferenceSetsRequest) GetPageToken() string {
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if m != nil {
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return m.PageToken
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}
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return ""
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}
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func (m *SearchReferenceSetsRequest) GetPageSize() int32 {
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if m != nil {
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return m.PageSize
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}
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return 0
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}
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type SearchReferenceSetsResponse struct {
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// The matching references sets.
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ReferenceSets []*ReferenceSet `protobuf:"bytes,1,rep,name=reference_sets,json=referenceSets" json:"reference_sets,omitempty"`
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// The continuation token, which is used to page through large result sets.
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// Provide this value in a subsequent request to return the next page of
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// results. This field will be empty if there aren't any additional results.
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NextPageToken string `protobuf:"bytes,2,opt,name=next_page_token,json=nextPageToken" json:"next_page_token,omitempty"`
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}
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func (m *SearchReferenceSetsResponse) Reset() { *m = SearchReferenceSetsResponse{} }
|
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func (m *SearchReferenceSetsResponse) String() string { return proto.CompactTextString(m) }
|
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func (*SearchReferenceSetsResponse) ProtoMessage() {}
|
||
|
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func (*SearchReferenceSetsResponse) Descriptor() ([]byte, []int) { return fileDescriptor10, []int{3} }
|
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|
|
|
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func (m *SearchReferenceSetsResponse) GetReferenceSets() []*ReferenceSet {
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|
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if m != nil {
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|
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return m.ReferenceSets
|
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|
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}
|
||
|
|
return nil
|
||
|
|
}
|
||
|
|
|
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|
|
func (m *SearchReferenceSetsResponse) GetNextPageToken() string {
|
||
|
|
if m != nil {
|
||
|
|
return m.NextPageToken
|
||
|
|
}
|
||
|
|
return ""
|
||
|
|
}
|
||
|
|
|
||
|
|
type GetReferenceSetRequest struct {
|
||
|
|
// The ID of the reference set.
|
||
|
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ReferenceSetId string `protobuf:"bytes,1,opt,name=reference_set_id,json=referenceSetId" json:"reference_set_id,omitempty"`
|
||
|
|
}
|
||
|
|
|
||
|
|
func (m *GetReferenceSetRequest) Reset() { *m = GetReferenceSetRequest{} }
|
||
|
|
func (m *GetReferenceSetRequest) String() string { return proto.CompactTextString(m) }
|
||
|
|
func (*GetReferenceSetRequest) ProtoMessage() {}
|
||
|
|
func (*GetReferenceSetRequest) Descriptor() ([]byte, []int) { return fileDescriptor10, []int{4} }
|
||
|
|
|
||
|
|
func (m *GetReferenceSetRequest) GetReferenceSetId() string {
|
||
|
|
if m != nil {
|
||
|
|
return m.ReferenceSetId
|
||
|
|
}
|
||
|
|
return ""
|
||
|
|
}
|
||
|
|
|
||
|
|
type SearchReferencesRequest struct {
|
||
|
|
// If present, return references for which the
|
||
|
|
// [md5checksum][google.genomics.v1.Reference.md5checksum] matches exactly.
|
||
|
|
Md5Checksums []string `protobuf:"bytes,1,rep,name=md5checksums" json:"md5checksums,omitempty"`
|
||
|
|
// If present, return references for which a prefix of any of
|
||
|
|
// [sourceAccessions][google.genomics.v1.Reference.source_accessions] match
|
||
|
|
// any of these strings. Accession numbers typically have a main number and a
|
||
|
|
// version, for example `GCF_000001405.26`.
|
||
|
|
Accessions []string `protobuf:"bytes,2,rep,name=accessions" json:"accessions,omitempty"`
|
||
|
|
// If present, return only references which belong to this reference set.
|
||
|
|
ReferenceSetId string `protobuf:"bytes,3,opt,name=reference_set_id,json=referenceSetId" json:"reference_set_id,omitempty"`
|
||
|
|
// The continuation token, which is used to page through large result sets.
|
||
|
|
// To get the next page of results, set this parameter to the value of
|
||
|
|
// `nextPageToken` from the previous response.
|
||
|
|
PageToken string `protobuf:"bytes,4,opt,name=page_token,json=pageToken" json:"page_token,omitempty"`
|
||
|
|
// The maximum number of results to return in a single page. If unspecified,
|
||
|
|
// defaults to 1024. The maximum value is 4096.
|
||
|
|
PageSize int32 `protobuf:"varint,5,opt,name=page_size,json=pageSize" json:"page_size,omitempty"`
|
||
|
|
}
|
||
|
|
|
||
|
|
func (m *SearchReferencesRequest) Reset() { *m = SearchReferencesRequest{} }
|
||
|
|
func (m *SearchReferencesRequest) String() string { return proto.CompactTextString(m) }
|
||
|
|
func (*SearchReferencesRequest) ProtoMessage() {}
|
||
|
|
func (*SearchReferencesRequest) Descriptor() ([]byte, []int) { return fileDescriptor10, []int{5} }
|
||
|
|
|
||
|
|
func (m *SearchReferencesRequest) GetMd5Checksums() []string {
|
||
|
|
if m != nil {
|
||
|
|
return m.Md5Checksums
|
||
|
|
}
|
||
|
|
return nil
|
||
|
|
}
|
||
|
|
|
||
|
|
func (m *SearchReferencesRequest) GetAccessions() []string {
|
||
|
|
if m != nil {
|
||
|
|
return m.Accessions
|
||
|
|
}
|
||
|
|
return nil
|
||
|
|
}
|
||
|
|
|
||
|
|
func (m *SearchReferencesRequest) GetReferenceSetId() string {
|
||
|
|
if m != nil {
|
||
|
|
return m.ReferenceSetId
|
||
|
|
}
|
||
|
|
return ""
|
||
|
|
}
|
||
|
|
|
||
|
|
func (m *SearchReferencesRequest) GetPageToken() string {
|
||
|
|
if m != nil {
|
||
|
|
return m.PageToken
|
||
|
|
}
|
||
|
|
return ""
|
||
|
|
}
|
||
|
|
|
||
|
|
func (m *SearchReferencesRequest) GetPageSize() int32 {
|
||
|
|
if m != nil {
|
||
|
|
return m.PageSize
|
||
|
|
}
|
||
|
|
return 0
|
||
|
|
}
|
||
|
|
|
||
|
|
type SearchReferencesResponse struct {
|
||
|
|
// The matching references.
|
||
|
|
References []*Reference `protobuf:"bytes,1,rep,name=references" json:"references,omitempty"`
|
||
|
|
// The continuation token, which is used to page through large result sets.
|
||
|
|
// Provide this value in a subsequent request to return the next page of
|
||
|
|
// results. This field will be empty if there aren't any additional results.
|
||
|
|
NextPageToken string `protobuf:"bytes,2,opt,name=next_page_token,json=nextPageToken" json:"next_page_token,omitempty"`
|
||
|
|
}
|
||
|
|
|
||
|
|
func (m *SearchReferencesResponse) Reset() { *m = SearchReferencesResponse{} }
|
||
|
|
func (m *SearchReferencesResponse) String() string { return proto.CompactTextString(m) }
|
||
|
|
func (*SearchReferencesResponse) ProtoMessage() {}
|
||
|
|
func (*SearchReferencesResponse) Descriptor() ([]byte, []int) { return fileDescriptor10, []int{6} }
|
||
|
|
|
||
|
|
func (m *SearchReferencesResponse) GetReferences() []*Reference {
|
||
|
|
if m != nil {
|
||
|
|
return m.References
|
||
|
|
}
|
||
|
|
return nil
|
||
|
|
}
|
||
|
|
|
||
|
|
func (m *SearchReferencesResponse) GetNextPageToken() string {
|
||
|
|
if m != nil {
|
||
|
|
return m.NextPageToken
|
||
|
|
}
|
||
|
|
return ""
|
||
|
|
}
|
||
|
|
|
||
|
|
type GetReferenceRequest struct {
|
||
|
|
// The ID of the reference.
|
||
|
|
ReferenceId string `protobuf:"bytes,1,opt,name=reference_id,json=referenceId" json:"reference_id,omitempty"`
|
||
|
|
}
|
||
|
|
|
||
|
|
func (m *GetReferenceRequest) Reset() { *m = GetReferenceRequest{} }
|
||
|
|
func (m *GetReferenceRequest) String() string { return proto.CompactTextString(m) }
|
||
|
|
func (*GetReferenceRequest) ProtoMessage() {}
|
||
|
|
func (*GetReferenceRequest) Descriptor() ([]byte, []int) { return fileDescriptor10, []int{7} }
|
||
|
|
|
||
|
|
func (m *GetReferenceRequest) GetReferenceId() string {
|
||
|
|
if m != nil {
|
||
|
|
return m.ReferenceId
|
||
|
|
}
|
||
|
|
return ""
|
||
|
|
}
|
||
|
|
|
||
|
|
type ListBasesRequest struct {
|
||
|
|
// The ID of the reference.
|
||
|
|
ReferenceId string `protobuf:"bytes,1,opt,name=reference_id,json=referenceId" json:"reference_id,omitempty"`
|
||
|
|
// The start position (0-based) of this query. Defaults to 0.
|
||
|
|
Start int64 `protobuf:"varint,2,opt,name=start" json:"start,omitempty"`
|
||
|
|
// The end position (0-based, exclusive) of this query. Defaults to the length
|
||
|
|
// of this reference.
|
||
|
|
End int64 `protobuf:"varint,3,opt,name=end" json:"end,omitempty"`
|
||
|
|
// The continuation token, which is used to page through large result sets.
|
||
|
|
// To get the next page of results, set this parameter to the value of
|
||
|
|
// `nextPageToken` from the previous response.
|
||
|
|
PageToken string `protobuf:"bytes,4,opt,name=page_token,json=pageToken" json:"page_token,omitempty"`
|
||
|
|
// The maximum number of bases to return in a single page. If unspecified,
|
||
|
|
// defaults to 200Kbp (kilo base pairs). The maximum value is 10Mbp (mega base
|
||
|
|
// pairs).
|
||
|
|
PageSize int32 `protobuf:"varint,5,opt,name=page_size,json=pageSize" json:"page_size,omitempty"`
|
||
|
|
}
|
||
|
|
|
||
|
|
func (m *ListBasesRequest) Reset() { *m = ListBasesRequest{} }
|
||
|
|
func (m *ListBasesRequest) String() string { return proto.CompactTextString(m) }
|
||
|
|
func (*ListBasesRequest) ProtoMessage() {}
|
||
|
|
func (*ListBasesRequest) Descriptor() ([]byte, []int) { return fileDescriptor10, []int{8} }
|
||
|
|
|
||
|
|
func (m *ListBasesRequest) GetReferenceId() string {
|
||
|
|
if m != nil {
|
||
|
|
return m.ReferenceId
|
||
|
|
}
|
||
|
|
return ""
|
||
|
|
}
|
||
|
|
|
||
|
|
func (m *ListBasesRequest) GetStart() int64 {
|
||
|
|
if m != nil {
|
||
|
|
return m.Start
|
||
|
|
}
|
||
|
|
return 0
|
||
|
|
}
|
||
|
|
|
||
|
|
func (m *ListBasesRequest) GetEnd() int64 {
|
||
|
|
if m != nil {
|
||
|
|
return m.End
|
||
|
|
}
|
||
|
|
return 0
|
||
|
|
}
|
||
|
|
|
||
|
|
func (m *ListBasesRequest) GetPageToken() string {
|
||
|
|
if m != nil {
|
||
|
|
return m.PageToken
|
||
|
|
}
|
||
|
|
return ""
|
||
|
|
}
|
||
|
|
|
||
|
|
func (m *ListBasesRequest) GetPageSize() int32 {
|
||
|
|
if m != nil {
|
||
|
|
return m.PageSize
|
||
|
|
}
|
||
|
|
return 0
|
||
|
|
}
|
||
|
|
|
||
|
|
type ListBasesResponse struct {
|
||
|
|
// The offset position (0-based) of the given `sequence` from the
|
||
|
|
// start of this `Reference`. This value will differ for each page
|
||
|
|
// in a paginated request.
|
||
|
|
Offset int64 `protobuf:"varint,1,opt,name=offset" json:"offset,omitempty"`
|
||
|
|
// A substring of the bases that make up this reference.
|
||
|
|
Sequence string `protobuf:"bytes,2,opt,name=sequence" json:"sequence,omitempty"`
|
||
|
|
// The continuation token, which is used to page through large result sets.
|
||
|
|
// Provide this value in a subsequent request to return the next page of
|
||
|
|
// results. This field will be empty if there aren't any additional results.
|
||
|
|
NextPageToken string `protobuf:"bytes,3,opt,name=next_page_token,json=nextPageToken" json:"next_page_token,omitempty"`
|
||
|
|
}
|
||
|
|
|
||
|
|
func (m *ListBasesResponse) Reset() { *m = ListBasesResponse{} }
|
||
|
|
func (m *ListBasesResponse) String() string { return proto.CompactTextString(m) }
|
||
|
|
func (*ListBasesResponse) ProtoMessage() {}
|
||
|
|
func (*ListBasesResponse) Descriptor() ([]byte, []int) { return fileDescriptor10, []int{9} }
|
||
|
|
|
||
|
|
func (m *ListBasesResponse) GetOffset() int64 {
|
||
|
|
if m != nil {
|
||
|
|
return m.Offset
|
||
|
|
}
|
||
|
|
return 0
|
||
|
|
}
|
||
|
|
|
||
|
|
func (m *ListBasesResponse) GetSequence() string {
|
||
|
|
if m != nil {
|
||
|
|
return m.Sequence
|
||
|
|
}
|
||
|
|
return ""
|
||
|
|
}
|
||
|
|
|
||
|
|
func (m *ListBasesResponse) GetNextPageToken() string {
|
||
|
|
if m != nil {
|
||
|
|
return m.NextPageToken
|
||
|
|
}
|
||
|
|
return ""
|
||
|
|
}
|
||
|
|
|
||
|
|
func init() {
|
||
|
|
proto.RegisterType((*Reference)(nil), "google.genomics.v1.Reference")
|
||
|
|
proto.RegisterType((*ReferenceSet)(nil), "google.genomics.v1.ReferenceSet")
|
||
|
|
proto.RegisterType((*SearchReferenceSetsRequest)(nil), "google.genomics.v1.SearchReferenceSetsRequest")
|
||
|
|
proto.RegisterType((*SearchReferenceSetsResponse)(nil), "google.genomics.v1.SearchReferenceSetsResponse")
|
||
|
|
proto.RegisterType((*GetReferenceSetRequest)(nil), "google.genomics.v1.GetReferenceSetRequest")
|
||
|
|
proto.RegisterType((*SearchReferencesRequest)(nil), "google.genomics.v1.SearchReferencesRequest")
|
||
|
|
proto.RegisterType((*SearchReferencesResponse)(nil), "google.genomics.v1.SearchReferencesResponse")
|
||
|
|
proto.RegisterType((*GetReferenceRequest)(nil), "google.genomics.v1.GetReferenceRequest")
|
||
|
|
proto.RegisterType((*ListBasesRequest)(nil), "google.genomics.v1.ListBasesRequest")
|
||
|
|
proto.RegisterType((*ListBasesResponse)(nil), "google.genomics.v1.ListBasesResponse")
|
||
|
|
}
|
||
|
|
|
||
|
|
// Reference imports to suppress errors if they are not otherwise used.
|
||
|
|
var _ context.Context
|
||
|
|
var _ grpc.ClientConn
|
||
|
|
|
||
|
|
// This is a compile-time assertion to ensure that this generated file
|
||
|
|
// is compatible with the grpc package it is being compiled against.
|
||
|
|
const _ = grpc.SupportPackageIsVersion4
|
||
|
|
|
||
|
|
// Client API for ReferenceServiceV1 service
|
||
|
|
|
||
|
|
type ReferenceServiceV1Client interface {
|
||
|
|
// Searches for reference sets which match the given criteria.
|
||
|
|
//
|
||
|
|
// For the definitions of references and other genomics resources, see
|
||
|
|
// [Fundamentals of Google
|
||
|
|
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
|
||
|
|
//
|
||
|
|
// Implements
|
||
|
|
// [GlobalAllianceApi.searchReferenceSets](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L71)
|
||
|
|
SearchReferenceSets(ctx context.Context, in *SearchReferenceSetsRequest, opts ...grpc.CallOption) (*SearchReferenceSetsResponse, error)
|
||
|
|
// Gets a reference set.
|
||
|
|
//
|
||
|
|
// For the definitions of references and other genomics resources, see
|
||
|
|
// [Fundamentals of Google
|
||
|
|
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
|
||
|
|
//
|
||
|
|
// Implements
|
||
|
|
// [GlobalAllianceApi.getReferenceSet](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L83).
|
||
|
|
GetReferenceSet(ctx context.Context, in *GetReferenceSetRequest, opts ...grpc.CallOption) (*ReferenceSet, error)
|
||
|
|
// Searches for references which match the given criteria.
|
||
|
|
//
|
||
|
|
// For the definitions of references and other genomics resources, see
|
||
|
|
// [Fundamentals of Google
|
||
|
|
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
|
||
|
|
//
|
||
|
|
// Implements
|
||
|
|
// [GlobalAllianceApi.searchReferences](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L146).
|
||
|
|
SearchReferences(ctx context.Context, in *SearchReferencesRequest, opts ...grpc.CallOption) (*SearchReferencesResponse, error)
|
||
|
|
// Gets a reference.
|
||
|
|
//
|
||
|
|
// For the definitions of references and other genomics resources, see
|
||
|
|
// [Fundamentals of Google
|
||
|
|
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
|
||
|
|
//
|
||
|
|
// Implements
|
||
|
|
// [GlobalAllianceApi.getReference](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L158).
|
||
|
|
GetReference(ctx context.Context, in *GetReferenceRequest, opts ...grpc.CallOption) (*Reference, error)
|
||
|
|
// Lists the bases in a reference, optionally restricted to a range.
|
||
|
|
//
|
||
|
|
// For the definitions of references and other genomics resources, see
|
||
|
|
// [Fundamentals of Google
|
||
|
|
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
|
||
|
|
//
|
||
|
|
// Implements
|
||
|
|
// [GlobalAllianceApi.getReferenceBases](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L221).
|
||
|
|
ListBases(ctx context.Context, in *ListBasesRequest, opts ...grpc.CallOption) (*ListBasesResponse, error)
|
||
|
|
}
|
||
|
|
|
||
|
|
type referenceServiceV1Client struct {
|
||
|
|
cc *grpc.ClientConn
|
||
|
|
}
|
||
|
|
|
||
|
|
func NewReferenceServiceV1Client(cc *grpc.ClientConn) ReferenceServiceV1Client {
|
||
|
|
return &referenceServiceV1Client{cc}
|
||
|
|
}
|
||
|
|
|
||
|
|
func (c *referenceServiceV1Client) SearchReferenceSets(ctx context.Context, in *SearchReferenceSetsRequest, opts ...grpc.CallOption) (*SearchReferenceSetsResponse, error) {
|
||
|
|
out := new(SearchReferenceSetsResponse)
|
||
|
|
err := grpc.Invoke(ctx, "/google.genomics.v1.ReferenceServiceV1/SearchReferenceSets", in, out, c.cc, opts...)
|
||
|
|
if err != nil {
|
||
|
|
return nil, err
|
||
|
|
}
|
||
|
|
return out, nil
|
||
|
|
}
|
||
|
|
|
||
|
|
func (c *referenceServiceV1Client) GetReferenceSet(ctx context.Context, in *GetReferenceSetRequest, opts ...grpc.CallOption) (*ReferenceSet, error) {
|
||
|
|
out := new(ReferenceSet)
|
||
|
|
err := grpc.Invoke(ctx, "/google.genomics.v1.ReferenceServiceV1/GetReferenceSet", in, out, c.cc, opts...)
|
||
|
|
if err != nil {
|
||
|
|
return nil, err
|
||
|
|
}
|
||
|
|
return out, nil
|
||
|
|
}
|
||
|
|
|
||
|
|
func (c *referenceServiceV1Client) SearchReferences(ctx context.Context, in *SearchReferencesRequest, opts ...grpc.CallOption) (*SearchReferencesResponse, error) {
|
||
|
|
out := new(SearchReferencesResponse)
|
||
|
|
err := grpc.Invoke(ctx, "/google.genomics.v1.ReferenceServiceV1/SearchReferences", in, out, c.cc, opts...)
|
||
|
|
if err != nil {
|
||
|
|
return nil, err
|
||
|
|
}
|
||
|
|
return out, nil
|
||
|
|
}
|
||
|
|
|
||
|
|
func (c *referenceServiceV1Client) GetReference(ctx context.Context, in *GetReferenceRequest, opts ...grpc.CallOption) (*Reference, error) {
|
||
|
|
out := new(Reference)
|
||
|
|
err := grpc.Invoke(ctx, "/google.genomics.v1.ReferenceServiceV1/GetReference", in, out, c.cc, opts...)
|
||
|
|
if err != nil {
|
||
|
|
return nil, err
|
||
|
|
}
|
||
|
|
return out, nil
|
||
|
|
}
|
||
|
|
|
||
|
|
func (c *referenceServiceV1Client) ListBases(ctx context.Context, in *ListBasesRequest, opts ...grpc.CallOption) (*ListBasesResponse, error) {
|
||
|
|
out := new(ListBasesResponse)
|
||
|
|
err := grpc.Invoke(ctx, "/google.genomics.v1.ReferenceServiceV1/ListBases", in, out, c.cc, opts...)
|
||
|
|
if err != nil {
|
||
|
|
return nil, err
|
||
|
|
}
|
||
|
|
return out, nil
|
||
|
|
}
|
||
|
|
|
||
|
|
// Server API for ReferenceServiceV1 service
|
||
|
|
|
||
|
|
type ReferenceServiceV1Server interface {
|
||
|
|
// Searches for reference sets which match the given criteria.
|
||
|
|
//
|
||
|
|
// For the definitions of references and other genomics resources, see
|
||
|
|
// [Fundamentals of Google
|
||
|
|
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
|
||
|
|
//
|
||
|
|
// Implements
|
||
|
|
// [GlobalAllianceApi.searchReferenceSets](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L71)
|
||
|
|
SearchReferenceSets(context.Context, *SearchReferenceSetsRequest) (*SearchReferenceSetsResponse, error)
|
||
|
|
// Gets a reference set.
|
||
|
|
//
|
||
|
|
// For the definitions of references and other genomics resources, see
|
||
|
|
// [Fundamentals of Google
|
||
|
|
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
|
||
|
|
//
|
||
|
|
// Implements
|
||
|
|
// [GlobalAllianceApi.getReferenceSet](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L83).
|
||
|
|
GetReferenceSet(context.Context, *GetReferenceSetRequest) (*ReferenceSet, error)
|
||
|
|
// Searches for references which match the given criteria.
|
||
|
|
//
|
||
|
|
// For the definitions of references and other genomics resources, see
|
||
|
|
// [Fundamentals of Google
|
||
|
|
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
|
||
|
|
//
|
||
|
|
// Implements
|
||
|
|
// [GlobalAllianceApi.searchReferences](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L146).
|
||
|
|
SearchReferences(context.Context, *SearchReferencesRequest) (*SearchReferencesResponse, error)
|
||
|
|
// Gets a reference.
|
||
|
|
//
|
||
|
|
// For the definitions of references and other genomics resources, see
|
||
|
|
// [Fundamentals of Google
|
||
|
|
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
|
||
|
|
//
|
||
|
|
// Implements
|
||
|
|
// [GlobalAllianceApi.getReference](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L158).
|
||
|
|
GetReference(context.Context, *GetReferenceRequest) (*Reference, error)
|
||
|
|
// Lists the bases in a reference, optionally restricted to a range.
|
||
|
|
//
|
||
|
|
// For the definitions of references and other genomics resources, see
|
||
|
|
// [Fundamentals of Google
|
||
|
|
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
|
||
|
|
//
|
||
|
|
// Implements
|
||
|
|
// [GlobalAllianceApi.getReferenceBases](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L221).
|
||
|
|
ListBases(context.Context, *ListBasesRequest) (*ListBasesResponse, error)
|
||
|
|
}
|
||
|
|
|
||
|
|
func RegisterReferenceServiceV1Server(s *grpc.Server, srv ReferenceServiceV1Server) {
|
||
|
|
s.RegisterService(&_ReferenceServiceV1_serviceDesc, srv)
|
||
|
|
}
|
||
|
|
|
||
|
|
func _ReferenceServiceV1_SearchReferenceSets_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
|
||
|
|
in := new(SearchReferenceSetsRequest)
|
||
|
|
if err := dec(in); err != nil {
|
||
|
|
return nil, err
|
||
|
|
}
|
||
|
|
if interceptor == nil {
|
||
|
|
return srv.(ReferenceServiceV1Server).SearchReferenceSets(ctx, in)
|
||
|
|
}
|
||
|
|
info := &grpc.UnaryServerInfo{
|
||
|
|
Server: srv,
|
||
|
|
FullMethod: "/google.genomics.v1.ReferenceServiceV1/SearchReferenceSets",
|
||
|
|
}
|
||
|
|
handler := func(ctx context.Context, req interface{}) (interface{}, error) {
|
||
|
|
return srv.(ReferenceServiceV1Server).SearchReferenceSets(ctx, req.(*SearchReferenceSetsRequest))
|
||
|
|
}
|
||
|
|
return interceptor(ctx, in, info, handler)
|
||
|
|
}
|
||
|
|
|
||
|
|
func _ReferenceServiceV1_GetReferenceSet_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
|
||
|
|
in := new(GetReferenceSetRequest)
|
||
|
|
if err := dec(in); err != nil {
|
||
|
|
return nil, err
|
||
|
|
}
|
||
|
|
if interceptor == nil {
|
||
|
|
return srv.(ReferenceServiceV1Server).GetReferenceSet(ctx, in)
|
||
|
|
}
|
||
|
|
info := &grpc.UnaryServerInfo{
|
||
|
|
Server: srv,
|
||
|
|
FullMethod: "/google.genomics.v1.ReferenceServiceV1/GetReferenceSet",
|
||
|
|
}
|
||
|
|
handler := func(ctx context.Context, req interface{}) (interface{}, error) {
|
||
|
|
return srv.(ReferenceServiceV1Server).GetReferenceSet(ctx, req.(*GetReferenceSetRequest))
|
||
|
|
}
|
||
|
|
return interceptor(ctx, in, info, handler)
|
||
|
|
}
|
||
|
|
|
||
|
|
func _ReferenceServiceV1_SearchReferences_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
|
||
|
|
in := new(SearchReferencesRequest)
|
||
|
|
if err := dec(in); err != nil {
|
||
|
|
return nil, err
|
||
|
|
}
|
||
|
|
if interceptor == nil {
|
||
|
|
return srv.(ReferenceServiceV1Server).SearchReferences(ctx, in)
|
||
|
|
}
|
||
|
|
info := &grpc.UnaryServerInfo{
|
||
|
|
Server: srv,
|
||
|
|
FullMethod: "/google.genomics.v1.ReferenceServiceV1/SearchReferences",
|
||
|
|
}
|
||
|
|
handler := func(ctx context.Context, req interface{}) (interface{}, error) {
|
||
|
|
return srv.(ReferenceServiceV1Server).SearchReferences(ctx, req.(*SearchReferencesRequest))
|
||
|
|
}
|
||
|
|
return interceptor(ctx, in, info, handler)
|
||
|
|
}
|
||
|
|
|
||
|
|
func _ReferenceServiceV1_GetReference_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
|
||
|
|
in := new(GetReferenceRequest)
|
||
|
|
if err := dec(in); err != nil {
|
||
|
|
return nil, err
|
||
|
|
}
|
||
|
|
if interceptor == nil {
|
||
|
|
return srv.(ReferenceServiceV1Server).GetReference(ctx, in)
|
||
|
|
}
|
||
|
|
info := &grpc.UnaryServerInfo{
|
||
|
|
Server: srv,
|
||
|
|
FullMethod: "/google.genomics.v1.ReferenceServiceV1/GetReference",
|
||
|
|
}
|
||
|
|
handler := func(ctx context.Context, req interface{}) (interface{}, error) {
|
||
|
|
return srv.(ReferenceServiceV1Server).GetReference(ctx, req.(*GetReferenceRequest))
|
||
|
|
}
|
||
|
|
return interceptor(ctx, in, info, handler)
|
||
|
|
}
|
||
|
|
|
||
|
|
func _ReferenceServiceV1_ListBases_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
|
||
|
|
in := new(ListBasesRequest)
|
||
|
|
if err := dec(in); err != nil {
|
||
|
|
return nil, err
|
||
|
|
}
|
||
|
|
if interceptor == nil {
|
||
|
|
return srv.(ReferenceServiceV1Server).ListBases(ctx, in)
|
||
|
|
}
|
||
|
|
info := &grpc.UnaryServerInfo{
|
||
|
|
Server: srv,
|
||
|
|
FullMethod: "/google.genomics.v1.ReferenceServiceV1/ListBases",
|
||
|
|
}
|
||
|
|
handler := func(ctx context.Context, req interface{}) (interface{}, error) {
|
||
|
|
return srv.(ReferenceServiceV1Server).ListBases(ctx, req.(*ListBasesRequest))
|
||
|
|
}
|
||
|
|
return interceptor(ctx, in, info, handler)
|
||
|
|
}
|
||
|
|
|
||
|
|
var _ReferenceServiceV1_serviceDesc = grpc.ServiceDesc{
|
||
|
|
ServiceName: "google.genomics.v1.ReferenceServiceV1",
|
||
|
|
HandlerType: (*ReferenceServiceV1Server)(nil),
|
||
|
|
Methods: []grpc.MethodDesc{
|
||
|
|
{
|
||
|
|
MethodName: "SearchReferenceSets",
|
||
|
|
Handler: _ReferenceServiceV1_SearchReferenceSets_Handler,
|
||
|
|
},
|
||
|
|
{
|
||
|
|
MethodName: "GetReferenceSet",
|
||
|
|
Handler: _ReferenceServiceV1_GetReferenceSet_Handler,
|
||
|
|
},
|
||
|
|
{
|
||
|
|
MethodName: "SearchReferences",
|
||
|
|
Handler: _ReferenceServiceV1_SearchReferences_Handler,
|
||
|
|
},
|
||
|
|
{
|
||
|
|
MethodName: "GetReference",
|
||
|
|
Handler: _ReferenceServiceV1_GetReference_Handler,
|
||
|
|
},
|
||
|
|
{
|
||
|
|
MethodName: "ListBases",
|
||
|
|
Handler: _ReferenceServiceV1_ListBases_Handler,
|
||
|
|
},
|
||
|
|
},
|
||
|
|
Streams: []grpc.StreamDesc{},
|
||
|
|
Metadata: "google/genomics/v1/references.proto",
|
||
|
|
}
|
||
|
|
|
||
|
|
func init() { proto.RegisterFile("google/genomics/v1/references.proto", fileDescriptor10) }
|
||
|
|
|
||
|
|
var fileDescriptor10 = []byte{
|
||
|
|
// 851 bytes of a gzipped FileDescriptorProto
|
||
|
|
0x1f, 0x8b, 0x08, 0x00, 0x00, 0x00, 0x00, 0x00, 0x02, 0xff, 0xac, 0x56, 0x41, 0x6f, 0x1b, 0x45,
|
||
|
|
0x14, 0xd6, 0x78, 0x63, 0x37, 0x7e, 0x76, 0x12, 0xf7, 0x15, 0xc2, 0xca, 0x25, 0xd4, 0x6c, 0x9a,
|
||
|
|
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|
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|
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||
|
|
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|
||
|
|
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|
||
|
|
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|
||
|
|
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|
||
|
|
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|
||
|
|
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|
||
|
|
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|
||
|
|
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|
||
|
|
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|
||
|
|
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|
||
|
|
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|
||
|
|
0xb1, 0x74, 0x5b, 0x03, 0x67, 0xd8, 0x0e, 0x7a, 0xf9, 0xc4, 0x27, 0x25, 0x8e, 0x1e, 0x6c, 0xa4,
|
||
|
|
0xf1, 0x29, 0x0b, 0x65, 0xf4, 0x82, 0xa7, 0x21, 0x4b, 0xdc, 0x5b, 0x03, 0x32, 0x6c, 0x06, 0x1d,
|
||
|
|
0x05, 0x3e, 0x53, 0xd8, 0x51, 0xe2, 0xfd, 0xdc, 0x80, 0x6e, 0xa9, 0xed, 0x84, 0xca, 0x05, 0x79,
|
||
|
|
0xbb, 0xb0, 0x51, 0x5a, 0x18, 0xb2, 0x44, 0xb8, 0x0d, 0xbd, 0x5b, 0xb7, 0x04, 0x8f, 0x12, 0xb1,
|
||
|
|
0x82, 0xd6, 0x05, 0x2e, 0x6b, 0x0b, 0x5c, 0x54, 0x96, 0x84, 0x8a, 0x38, 0x63, 0x53, 0xe5, 0xbe,
|
||
|
|
0x11, 0x6f, 0x43, 0x78, 0x0f, 0x3a, 0x91, 0x10, 0x74, 0x72, 0x7a, 0xf1, 0xb5, 0xca, 0xd1, 0xd2,
|
||
|
|
0x11, 0x50, 0x40, 0x47, 0x49, 0xc5, 0xbe, 0x5b, 0x2b, 0xd9, 0xb7, 0x5e, 0x6f, 0x9f, 0xf7, 0x1b,
|
||
|
|
0x81, 0xfe, 0x09, 0x8d, 0xb2, 0xf8, 0xdc, 0x36, 0x48, 0x04, 0xf4, 0xab, 0x4b, 0x2a, 0x24, 0x7a,
|
||
|
|
0xd0, 0xb5, 0x04, 0x0a, 0x97, 0xe4, 0xbe, 0xd8, 0x18, 0xbe, 0x03, 0x60, 0x6d, 0x94, 0x3b, 0x67,
|
||
|
|
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|
||
|
|
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|
||
|
|
0x57, 0xc0, 0x09, 0x7b, 0x49, 0xbd, 0x1f, 0x08, 0xdc, 0xad, 0xe5, 0x2f, 0xa6, 0x3c, 0x15, 0x14,
|
||
|
|
0x9f, 0xc2, 0xe6, 0xac, 0xb2, 0x82, 0xca, 0x5c, 0x42, 0xe7, 0xf1, 0x60, 0xb4, 0xd8, 0x21, 0x23,
|
||
|
|
0x3b, 0x45, 0x30, 0x3b, 0x11, 0x2a, 0x21, 0x3e, 0x80, 0xad, 0x94, 0xbe, 0x90, 0xa1, 0xc5, 0xb4,
|
||
|
|
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|
||
|
|
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|
||
|
|
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|
||
|
|
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|
||
|
|
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|
||
|
|
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|
||
|
|
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|
||
|
|
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|
||
|
|
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|
||
|
|
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|
||
|
|
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|
||
|
|
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|
||
|
|
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|
||
|
|
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|
||
|
|
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|
||
|
|
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|
||
|
|
0x06, 0x9a, 0x5d, 0xdf, 0x7b, 0x73, 0x9e, 0x9d, 0xe5, 0xd0, 0x35, 0x74, 0x6d, 0xed, 0xf8, 0xde,
|
||
|
|
0x32, 0x77, 0x0a, 0x22, 0x37, 0x77, 0xaa, 0xb7, 0xa7, 0x77, 0xbe, 0x87, 0x3b, 0x95, 0x9d, 0x5f,
|
||
|
|
0xd9, 0xcd, 0x73, 0x8d, 0xdf, 0x11, 0x68, 0x97, 0xe7, 0x18, 0xef, 0xd7, 0xe5, 0xac, 0x76, 0x60,
|
||
|
|
0x7f, 0x6f, 0x49, 0x94, 0xd1, 0xbe, 0xaf, 0x19, 0xec, 0xe1, 0xee, 0x8d, 0x0c, 0xfc, 0x53, 0xb5,
|
||
|
|
0xe8, 0xf0, 0x4b, 0xd8, 0x8e, 0xf9, 0xa4, 0x26, 0xf1, 0xe1, 0xd6, 0xcc, 0xd6, 0x63, 0xf5, 0x4a,
|
||
|
|
0x3a, 0x26, 0x5f, 0x3c, 0x29, 0xc2, 0xf8, 0x45, 0x94, 0x8e, 0x47, 0x3c, 0x1b, 0xab, 0x97, 0x98,
|
||
|
|
0x7e, 0x43, 0xf9, 0xf9, 0x54, 0x34, 0x65, 0xc2, 0x7e, 0x9d, 0x7d, 0x54, 0x7c, 0xff, 0x43, 0xc8,
|
||
|
|
0x69, 0x4b, 0x47, 0xbe, 0xff, 0x6f, 0x00, 0x00, 0x00, 0xff, 0xff, 0xd7, 0x9f, 0xb6, 0x11, 0xc6,
|
||
|
|
0x09, 0x00, 0x00,
|
||
|
|
}
|