276 lines
11 KiB
Go
276 lines
11 KiB
Go
// Code generated by protoc-gen-go. DO NOT EDIT.
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// source: google/genomics/v1/readgroup.proto
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package genomics
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import proto "github.com/golang/protobuf/proto"
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import fmt "fmt"
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import math "math"
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import _ "google.golang.org/genproto/googleapis/api/annotations"
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import google_protobuf3 "github.com/golang/protobuf/ptypes/struct"
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// Reference imports to suppress errors if they are not otherwise used.
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var _ = proto.Marshal
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var _ = fmt.Errorf
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var _ = math.Inf
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// A read group is all the data that's processed the same way by the sequencer.
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type ReadGroup struct {
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// The server-generated read group ID, unique for all read groups.
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// Note: This is different than the @RG ID field in the SAM spec. For that
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// value, see [name][google.genomics.v1.ReadGroup.name].
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Id string `protobuf:"bytes,1,opt,name=id" json:"id,omitempty"`
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// The dataset to which this read group belongs.
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DatasetId string `protobuf:"bytes,2,opt,name=dataset_id,json=datasetId" json:"dataset_id,omitempty"`
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// The read group name. This corresponds to the @RG ID field in the SAM spec.
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Name string `protobuf:"bytes,3,opt,name=name" json:"name,omitempty"`
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// A free-form text description of this read group.
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Description string `protobuf:"bytes,4,opt,name=description" json:"description,omitempty"`
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// A client-supplied sample identifier for the reads in this read group.
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SampleId string `protobuf:"bytes,5,opt,name=sample_id,json=sampleId" json:"sample_id,omitempty"`
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// The experiment used to generate this read group.
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Experiment *ReadGroup_Experiment `protobuf:"bytes,6,opt,name=experiment" json:"experiment,omitempty"`
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// The predicted insert size of this read group. The insert size is the length
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// the sequenced DNA fragment from end-to-end, not including the adapters.
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PredictedInsertSize int32 `protobuf:"varint,7,opt,name=predicted_insert_size,json=predictedInsertSize" json:"predicted_insert_size,omitempty"`
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// The programs used to generate this read group. Programs are always
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// identical for all read groups within a read group set. For this reason,
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// only the first read group in a returned set will have this field
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// populated.
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Programs []*ReadGroup_Program `protobuf:"bytes,10,rep,name=programs" json:"programs,omitempty"`
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// The reference set the reads in this read group are aligned to.
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ReferenceSetId string `protobuf:"bytes,11,opt,name=reference_set_id,json=referenceSetId" json:"reference_set_id,omitempty"`
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// A map of additional read group information. This must be of the form
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// map<string, string[]> (string key mapping to a list of string values).
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Info map[string]*google_protobuf3.ListValue `protobuf:"bytes,12,rep,name=info" json:"info,omitempty" protobuf_key:"bytes,1,opt,name=key" protobuf_val:"bytes,2,opt,name=value"`
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}
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func (m *ReadGroup) Reset() { *m = ReadGroup{} }
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func (m *ReadGroup) String() string { return proto.CompactTextString(m) }
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func (*ReadGroup) ProtoMessage() {}
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func (*ReadGroup) Descriptor() ([]byte, []int) { return fileDescriptor7, []int{0} }
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func (m *ReadGroup) GetId() string {
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if m != nil {
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return m.Id
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}
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return ""
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}
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func (m *ReadGroup) GetDatasetId() string {
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if m != nil {
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return m.DatasetId
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}
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return ""
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}
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func (m *ReadGroup) GetName() string {
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if m != nil {
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return m.Name
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}
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return ""
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}
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func (m *ReadGroup) GetDescription() string {
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if m != nil {
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return m.Description
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}
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return ""
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}
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func (m *ReadGroup) GetSampleId() string {
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if m != nil {
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return m.SampleId
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}
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return ""
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}
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func (m *ReadGroup) GetExperiment() *ReadGroup_Experiment {
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if m != nil {
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return m.Experiment
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}
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return nil
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}
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func (m *ReadGroup) GetPredictedInsertSize() int32 {
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if m != nil {
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return m.PredictedInsertSize
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}
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return 0
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}
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func (m *ReadGroup) GetPrograms() []*ReadGroup_Program {
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if m != nil {
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return m.Programs
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}
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return nil
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}
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func (m *ReadGroup) GetReferenceSetId() string {
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if m != nil {
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return m.ReferenceSetId
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}
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return ""
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}
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func (m *ReadGroup) GetInfo() map[string]*google_protobuf3.ListValue {
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if m != nil {
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return m.Info
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}
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return nil
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}
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type ReadGroup_Experiment struct {
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// A client-supplied library identifier; a library is a collection of DNA
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// fragments which have been prepared for sequencing from a sample. This
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// field is important for quality control as error or bias can be introduced
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// during sample preparation.
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LibraryId string `protobuf:"bytes,1,opt,name=library_id,json=libraryId" json:"library_id,omitempty"`
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// The platform unit used as part of this experiment, for example
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// flowcell-barcode.lane for Illumina or slide for SOLiD. Corresponds to the
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// @RG PU field in the SAM spec.
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PlatformUnit string `protobuf:"bytes,2,opt,name=platform_unit,json=platformUnit" json:"platform_unit,omitempty"`
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// The sequencing center used as part of this experiment.
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SequencingCenter string `protobuf:"bytes,3,opt,name=sequencing_center,json=sequencingCenter" json:"sequencing_center,omitempty"`
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// The instrument model used as part of this experiment. This maps to
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// sequencing technology in the SAM spec.
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InstrumentModel string `protobuf:"bytes,4,opt,name=instrument_model,json=instrumentModel" json:"instrument_model,omitempty"`
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}
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func (m *ReadGroup_Experiment) Reset() { *m = ReadGroup_Experiment{} }
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func (m *ReadGroup_Experiment) String() string { return proto.CompactTextString(m) }
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func (*ReadGroup_Experiment) ProtoMessage() {}
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func (*ReadGroup_Experiment) Descriptor() ([]byte, []int) { return fileDescriptor7, []int{0, 0} }
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func (m *ReadGroup_Experiment) GetLibraryId() string {
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if m != nil {
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return m.LibraryId
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}
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return ""
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}
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func (m *ReadGroup_Experiment) GetPlatformUnit() string {
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if m != nil {
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return m.PlatformUnit
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}
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return ""
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}
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func (m *ReadGroup_Experiment) GetSequencingCenter() string {
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if m != nil {
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return m.SequencingCenter
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}
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return ""
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}
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func (m *ReadGroup_Experiment) GetInstrumentModel() string {
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if m != nil {
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return m.InstrumentModel
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}
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return ""
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}
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type ReadGroup_Program struct {
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// The command line used to run this program.
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CommandLine string `protobuf:"bytes,1,opt,name=command_line,json=commandLine" json:"command_line,omitempty"`
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// The user specified locally unique ID of the program. Used along with
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// `prevProgramId` to define an ordering between programs.
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Id string `protobuf:"bytes,2,opt,name=id" json:"id,omitempty"`
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// The display name of the program. This is typically the colloquial name of
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// the tool used, for example 'bwa' or 'picard'.
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Name string `protobuf:"bytes,3,opt,name=name" json:"name,omitempty"`
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// The ID of the program run before this one.
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PrevProgramId string `protobuf:"bytes,4,opt,name=prev_program_id,json=prevProgramId" json:"prev_program_id,omitempty"`
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// The version of the program run.
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Version string `protobuf:"bytes,5,opt,name=version" json:"version,omitempty"`
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}
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func (m *ReadGroup_Program) Reset() { *m = ReadGroup_Program{} }
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func (m *ReadGroup_Program) String() string { return proto.CompactTextString(m) }
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func (*ReadGroup_Program) ProtoMessage() {}
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func (*ReadGroup_Program) Descriptor() ([]byte, []int) { return fileDescriptor7, []int{0, 1} }
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func (m *ReadGroup_Program) GetCommandLine() string {
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if m != nil {
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return m.CommandLine
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}
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return ""
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}
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func (m *ReadGroup_Program) GetId() string {
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if m != nil {
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return m.Id
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}
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return ""
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}
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func (m *ReadGroup_Program) GetName() string {
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if m != nil {
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return m.Name
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}
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return ""
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}
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func (m *ReadGroup_Program) GetPrevProgramId() string {
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if m != nil {
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return m.PrevProgramId
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}
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return ""
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}
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func (m *ReadGroup_Program) GetVersion() string {
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if m != nil {
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return m.Version
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}
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return ""
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}
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func init() {
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proto.RegisterType((*ReadGroup)(nil), "google.genomics.v1.ReadGroup")
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proto.RegisterType((*ReadGroup_Experiment)(nil), "google.genomics.v1.ReadGroup.Experiment")
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proto.RegisterType((*ReadGroup_Program)(nil), "google.genomics.v1.ReadGroup.Program")
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}
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func init() { proto.RegisterFile("google/genomics/v1/readgroup.proto", fileDescriptor7) }
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var fileDescriptor7 = []byte{
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// 585 bytes of a gzipped FileDescriptorProto
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